BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008C12LP1|AL425842
(571 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1052 929 0.0
>3x_Contig1052
Length = 4051
Score = 929 bits (461), Expect = 0.0
Identities = 538/572 (94%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 1 ttkatttcttcaagaatatctcaattacgggacactccatgggcggtttcggtgccctat 60
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 ttgatttcttcaagaatatctcaattacgggacactccatgggcggtttcggtgccctat 3221
Query: 61 cgggatatttgaagaatatcaacagatataagtcttgttctgcctttgctccaatcgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 cgggatatttgaagaatatcaacagatataagtcttgttctgcctttgctccaatcgtga 3161
Query: 121 accctagtgctgttccttggggtcaaaagg-cttttacggggtatttaggttcttccaat 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3160 accctagtgctgttccttggggtcaaaagggcttttacggggtatttaggttcttccaat 3101
Query: 180 aaagaagcttgggatggatacgacccaacaaaattgataaaacatgtcgagaatctcaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aaagaagcttgggatggatacgacccaacaaaattgataaaacatgtcgagaatctcaat 3041
Query: 240 ggaaataagattttaattcatgtgggctccaacgatccatttttagaaaagcacttgagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 ggaaataagattttaattcatgtgggctccaacgatccatttttagaaaagcacttgagg 2981
Query: 300 cctcatttgcttcaagaagcagccaagggtactttttgggaagggaaaattgaagtaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 cctcatttgcttcaagaagcagccaagggtactttttgggaagggaaaattgaagtaaac 2921
Query: 360 tttgaagatggtttcgatcattcttamtamttmatataaaagtttgttmmtmaamatgct 419
|||||||||||||||||||||||||| || || |||| | ||||||| | || |||||
Sbjct: 2920 tttgaagatggtttcgatcattcttactacttcatatccacgtttgttcctcaacatgct 2861
Query: 420 gngttmmatgmtaagmatttgggtttgttttgaatgaaaaagaatggttttaaaaaaaat 479
| ||| ||| |||| ||||||||||| |||||||| ||||||||||||||| || |||
Sbjct: 2860 gagttccatgctaagcatttgggtttgatttgaatgcaaaagaatggttttaccaacaat 2801
Query: 480 ttgaatggattgattaaatttttataaaatamattataagttaaaataattatgtaatta 539
||| |||||||||| ||||||| | ||||| |||||| ||||| |||||||||||||||
Sbjct: 2800 ttgcctggattgattcaatttttctcaaatacattatacgttaacataattatgtaatta 2741
Query: 540 tataatwatgtataataatgaaatttaaaatt 571
|||||| ||||||||| ||| ||||||||||
Sbjct: 2740 tataattatgtataatcatgccatttaaaatt 2709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5512
Number of Sequences: 1807
Number of extensions: 5512
Number of successful extensions: 149
Number of sequences better than 1.0e-20: 1
length of query: 571
length of database: 10,358,551
effective HSP length: 16
effective length of query: 555
effective length of database: 10,329,639
effective search space: 5732949645
effective search space used: 5732949645
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.2 bits)